Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs7340831 chr4:78961416 A/T 0 178 2.93 25.87 25.28 KM Plot
PCPG rs7341735 chr9:36126771 T/C 0 177 25.47 26.05 2.93 KM Plot
PCPG rs73420376 chr15:56283648 T/C 0.000465 174 25.2 26.53 21.55 KM Plot
PCPG rs73441745 chr22:50237606 G/A 0.000161 176 25.6 20.17 15.18 KM Plot
PCPG rs73441772 chr22:50258709 C/T 0.000172 177 25.28 20.2 15.18 KM Plot
PCPG rs734488 chr22:49578285 G/A 0.000167 174 28.3 23.37 25.17 KM Plot
PCPG rs73454228 chr7:134567584 A/G 6.94E-6 176 25.87 24.75 6.1 KM Plot
PCPG rs734559 chr18:72179579 G/A 3.59E-6 176 24.7 28.83 10.3 KM Plot
PCPG rs73504192 chr19:14727017 C/T 6.41E-6 173 25.6 24.32 25.17 KM Plot
PCPG rs7355711 chr2:176198458 A/T 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs73568761 chr11:112970636 C/T 8.39E-5 174 25.87 18.88 36.73 KM Plot
PCPG rs73573720 chr13:114155345 G/A 4.65E-12 177 24.23 29.95 3.32 KM Plot
PCPG rs7359455 chr16:71827799 T/C 0.000155 174 25.17 26.57 6.58 KM Plot
PCPG rs73603034 chr20:5993194 T/C 0 178 25.67 23.08 2.93 KM Plot
PCPG rs73603051 chr20:6008509 G/A 0 177 25.67 22.63 2.93 KM Plot